SNP Report
Basic Info
| Name | rs3779250 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 7:30654644 - 30654644(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.398962 | ||
| Annotation | intron_variant; NMD_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000506074, ENST00000471646, ENST00000341843, ENST00000348438, ENST00000452278); NMD_transcript_variant(ENST00000452278) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000341843, ENST00000506074, ENST00000348438, ENST00000471646) | ||
| PolyPhen Annotation | benign; probably_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000341843, ENST00000506074); probably_damaging(ENST00000348438, ENST00000471646) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Strong transcription;Weak transcription;Genic enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Wolf, E. J.,2013 | PTSD diagnosis | OR=0.69, 95% CI: 0.52-0.90, P-value uncorrected=0.006, P-val...... OR=0.69, 95% CI: 0.52-0.90, P-value uncorrected=0.006, P-value corrected=0.10 More... | It showed nominally significant associations with lifetime P...... It showed nominally significant associations with lifetime PTSD diagnosis, but didn't pass the multiple testing. More... | Significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CRHR2 | corticotropin releasing hormone receptor 2 | 7p14.3 | 2(2/0/0) |
SNPs in LD with rs3779250 (count: 28)
Literature-origin SNPs (count: 0)
LD-proxies (count: 28)
SNP related eQTL (count: 1)