SNP Report
Basic Info
| Name |
rs10227133
dbSNP
Ensembl
|
| Location |
7:30569287 - 30569287(+) |
| Variant Seq |
T |
| Ancestral Allele |
A |
| Ref Seq |
A |
| Minor Allele Frequence |
0.404752 |
| Annotation |
upstream_gene_variant; intron_variant; non_coding_transcript_variant
|
| Variant Effect |
upstream_gene_variant(ENST00000621272, ENST00000355837); intron_variant(ENST00000582145, ENST00000584372, ENST00000582733, ENST00000581665, ENST00000614950, ENST00000579024, ENST00000581794, ENST00000584621, ENST00000578245, ENST00000426529, ENST00000584199, ENST00000584108); non_coding_transcript_variant(ENST00000582145, ENST00000584372, ENST00000582733, ENST00000581665, ENST00000614950, ENST00000579024, ENST00000581794, ENST00000584621, ENST00000578245, ENST00000426529, ENST00000584199, ENST00000584108)
|
| SIFT Annotation |
tolerated
|
| SIFT Variant Effect |
tolerated(ENST00000275428, ENST00000426081, ENST00000409436, ENST00000598361)
|
| PolyPhen Annotation |
benign; probably_damaging
|
| PolyPhen Variant Effect |
benign(ENST00000409436); probably_damaging(ENST00000275428, ENST00000426081, ENST00000598361)
|
| rSNP? |
Yes
Link in rVarBase
|
| Related Regulatory Elements |
n/a
|
| Chromatin State |
Enhancers;Weak transcription;Flanking Active TSS;Strong transcription
|
| No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
| Source |
LD-proxy |
SNP related association results
SNP related genes (count: 0)
SNPs in LD with rs10227133 (count: 0)
SNP related eQTL (count: 1)
