SNP Report
Basic Info
| Name |
rs10243040
dbSNP
Ensembl
|
| Location |
7:30585767 - 30585767(+) |
| Variant Seq |
C |
| Ancestral Allele |
G |
| Ref Seq |
G |
| Minor Allele Frequence |
0.405152 |
| Annotation |
non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant
|
| Variant Effect |
non_coding_transcript_exon_variant(ENST00000454922); intron_variant(ENST00000584372, ENST00000426529, ENST00000581794, ENST00000582733, ENST00000578994, ENST00000584199, ENST00000580440, ENST00000579174, ENST00000582549, ENST00000581665, ENST00000583664); non_coding_transcript_variant(ENST00000584372, ENST00000426529, ENST00000581794, ENST00000582733, ENST00000578994, ENST00000584199, ENST00000580440, ENST00000454922, ENST00000579174, ENST00000582549, ENST00000581665, ENST00000583664)
|
| SIFT Annotation |
tolerated
|
| SIFT Variant Effect |
tolerated(ENST00000389266, LRG_243t1)
|
| PolyPhen Annotation |
benign
|
| PolyPhen Variant Effect |
benign(ENST00000389266, LRG_243t1)
|
| rSNP? |
Yes
Link in rVarBase
|
| Related Regulatory Elements |
lncRNA
|
| Chromatin State |
Enhancers;Weak transcription;Strong transcription;Genic enhancers
|
| No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
| Source |
LD-proxy |
SNP related association results
SNP related genes (count: 0)
SNPs in LD with rs10243040 (count: 0)
SNP related eQTL (count: 1)
