PTSDgene database

SNP Report

Basic Info
Name rs10243040 dbSNP Ensembl
Location 7:30585767 - 30585767(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.405152
Annotation non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000454922); intron_variant(ENST00000584372, ENST00000426529, ENST00000581794, ENST00000582733, ENST00000578994, ENST00000584199, ENST00000580440, ENST00000579174, ENST00000582549, ENST00000581665, ENST00000583664); non_coding_transcript_variant(ENST00000584372, ENST00000426529, ENST00000581794, ENST00000582733, ENST00000578994, ENST00000584199, ENST00000580440, ENST00000454922, ENST00000579174, ENST00000582549, ENST00000581665, ENST00000583664)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000389266, LRG_243t1)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000389266, LRG_243t1)
rSNP? Yes Link in rVarBase
Related Regulatory Elements lncRNA
Chromatin State Enhancers;Weak transcription;Strong transcription;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs10243040 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx