SNP Report
Name | rs12532057 dbSNP Ensembl | ||
---|---|---|---|
Location | 7:30625366 - 30625366(+) | ||
Variant Seq | T | ||
Ancestral Allele | A | ||
Ref Seq | A | ||
Minor Allele Frequence | 0.401158 | ||
Annotation | downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant | ||
Variant Effect | downstream_gene_variant(ENST00000478124, ENST00000484093); upstream_gene_variant(ENST00000465748); intron_variant(ENST00000389266, LRG_243t1, ENST00000444666, ENST00000470392); NMD_transcript_variant(ENST00000444666); non_coding_transcript_variant(ENST00000470392) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000389266, LRG_243t1) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000389266, LRG_243t1) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
Chromatin State | Strong transcription;Weak transcription | ||
No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
Source | LD-proxy |