PTSDgene database

SNP Report

Basic Info
Name rs10249885 dbSNP Ensembl
Location 7:30622621 - 30622621(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.404353
Annotation downstream_gene_variant; non_coding_transcript_exon_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000484093); non_coding_transcript_exon_variant(ENST00000478124); intron_variant(ENST00000389266, ENST00000444666, ENST00000470392, LRG_243t1); NMD_transcript_variant(ENST00000444666); non_coding_transcript_variant(ENST00000478124, ENST00000470392)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000444666); tolerated(LRG_243t1, ENST00000389266)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(LRG_243t1, ENST00000389266); probably_damaging(ENST00000444666)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs10249885 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx