SNP Report
Basic Info
| Name | rs10249885 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 7:30622621 - 30622621(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.404353 | ||
| Annotation | downstream_gene_variant; non_coding_transcript_exon_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000484093); non_coding_transcript_exon_variant(ENST00000478124); intron_variant(ENST00000389266, ENST00000444666, ENST00000470392, LRG_243t1); NMD_transcript_variant(ENST00000444666); non_coding_transcript_variant(ENST00000478124, ENST00000470392) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000444666); tolerated(LRG_243t1, ENST00000389266) | ||
| PolyPhen Annotation | benign; probably_damaging | ||
| PolyPhen Variant Effect | benign(LRG_243t1, ENST00000389266); probably_damaging(ENST00000444666) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription;Strong transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GARS | glycyl-tRNA synthetase | 7p15 | Mapped by LD-proxy, rSNP target |
SNPs in LD with rs10249885 (count: 0)
SNP related eQTL (count: 1)