PTSDgene database

SNP Report

Basic Info
Name rs6947982 dbSNP Ensembl
Location 7:30619934 - 30619934(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.404553
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000470392, ENST00000444666); intron_variant(ENST00000389266, ENST00000484093, LRG_243t1, ENST00000478124); non_coding_transcript_variant(ENST00000484093, ENST00000478124)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000389266, LRG_243t1)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000389266, LRG_243t1)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Strong transcription;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs6947982 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx