PTSDgene database

SNP Report

Basic Info
Name rs10480088 dbSNP Ensembl
Location 7:30580380 - 30580380(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.405152
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000584023, ENST00000578245); intron_variant(ENST00000583664, ENST00000426529, ENST00000578994, ENST00000584199, ENST00000581665, ENST00000582549, ENST00000580440, ENST00000454922, ENST00000582733, ENST00000581794, ENST00000579174, ENST00000584372); non_coding_transcript_variant(ENST00000583664, ENST00000426529, ENST00000578994, ENST00000584199, ENST00000581665, ENST00000582549, ENST00000580440, ENST00000454922, ENST00000582733, ENST00000581794, ENST00000579174, ENST00000584372)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000275428, ENST00000426081, ENST00000409436, ENST00000598361)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000409436); probably_damaging(ENST00000275428, ENST00000426081, ENST00000598361)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription;ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs10480088 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx