PTSDgene database

SNP Report

Basic Info
Name rs4722999 dbSNP Ensembl
Location 7:30654159 - 30654159(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.407748
Annotation intron_variant; NMD_transcript_variant
Variant Effect intron_variant(ENST00000506074, ENST00000341843, ENST00000471646, ENST00000348438, ENST00000452278); NMD_transcript_variant(ENST00000452278)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000506074, ENST00000348438, ENST00000341843, ENST00000471646)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000348438, ENST00000471646); probably_damaging(ENST00000506074, ENST00000341843)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHR2 corticotropin releasing hormone receptor 2 7p14.3 2(2/0/0)

SNPs in LD with rs4722999 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx