PTSDgene database

SNP Report

Basic Info
Name rs2214837 dbSNP Ensembl
Location 7:30634164 - 30634164(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.399561
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000496643, ENST00000485784, ENST00000389266, ENST00000444666, ENST00000465748, LRG_243t1)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000389266, ENST00000444666, LRG_243t1)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000389266, ENST00000444666, LRG_243t1)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Strong transcription;Weak transcription;Genic enhancers;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs2214837 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx