PTSDgene database

SNP Report

Basic Info
Name rs1558064 dbSNP Ensembl
Location 7:30603453 - 30603453(+)
Variant Seq A
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.399161
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000454308); intron_variant(LRG_243t1, ENST00000389266, ENST00000478124); non_coding_transcript_variant(ENST00000478124)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000389266, LRG_243t1)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000389266, LRG_243t1)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Strong transcription;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs1558064 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx