PTSDgene database

SNP Report

Basic Info
Name rs13228758 dbSNP Ensembl
Location 7:30625263 - 30625263(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.401358
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000484093, ENST00000478124); upstream_gene_variant(ENST00000465748); intron_variant(ENST00000444666, LRG_243t1, ENST00000389266, ENST00000470392); NMD_transcript_variant(ENST00000444666); non_coding_transcript_variant(ENST00000470392)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000389266, LRG_243t1, ENST00000444666)
PolyPhen Annotation benign; probably_damaging; possibly_damaging
PolyPhen Variant Effect benign(ENST00000389266, LRG_243t1, ENST00000444666); probably_damaging(ENST00000444666); possibly_damaging(ENST00000389266, LRG_243t1)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Strong transcription;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs13228758 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx