PTSDgene database

SNP Report

Basic Info
Name rs10232372 dbSNP Ensembl
Location 7:30587902 - 30587902(+)
Variant Seq T
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.404752
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000454922); intron_variant(ENST00000584372, ENST00000582549, ENST00000582733, ENST00000579174, ENST00000578994, ENST00000580440, ENST00000426529, ENST00000584199, ENST00000581794, ENST00000581665, ENST00000583664); non_coding_transcript_variant(ENST00000584372, ENST00000582549, ENST00000582733, ENST00000579174, ENST00000578994, ENST00000580440, ENST00000426529, ENST00000584199, ENST00000581794, ENST00000581665, ENST00000583664)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(LRG_243t1, ENST00000389266)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000627489, ENST00000454308)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription;ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs10232372 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx