PTSDgene database

SNP Report

Basic Info
Name rs4576167 dbSNP Ensembl
Location 5:168459692 - 168459692(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.256989
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000524038, ENST00000393895, ENST00000265293, ENST00000522140, ENST00000619752, ENST00000524228, ENST00000521089); non_coding_transcript_variant(ENST00000522140)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000524038, ENST00000619752, ENST00000393895, ENST00000524228, ENST00000521089, ENST00000265293)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000524038, ENST00000619752, ENST00000393895, ENST00000524228, ENST00000521089, ENST00000265293)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 4 (Positive: 4; Negative: 0; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 4)
Reference Phenotype Statistical Values Author Comments Marker's Category
Wilker, S.,2013 Current PTSD In Rwandan Sample: did not survive multiple comparison corr...... In Rwandan Sample: did not survive multiple comparison correction, In the Ugandan sample: LR= 4.64, P-value= 0.03, OR= 0.30 [95% CI = 0.10-0.99] More... In the Ugandan sample, an strong association of the SNP wit...... In the Ugandan sample, an strong association of the SNP with current PTSD was observed. More... Significant
Wilker, S.,2013 PDS hyperarousal score In Rwandan Sample: no detail information, In the Ugandan sa...... In Rwandan Sample: no detail information, In the Ugandan sample: Exclusion of one outlier: LR= 5.52, P-value= 0.02 More... The SNP has a significant association with the PDS hyperarou...... The SNP has a significant association with the PDS hyperarousal score. More... Significant
Wilker, S.,2013 PDS intrusion score In Rwandan Sample: no detail information, In the Ugandan sa...... In Rwandan Sample: no detail information, In the Ugandan sample: Exclusion of one outlier: LR= 5.35, P-value= 0.02 More... The SNP has a significant association with the PDS intrusion...... The SNP has a significant association with the PDS intrusion score. More... Significant
Wilker, S.,2013 PTSD diagnosis In Rwandan Sample: nominal association P-value=0.000075 In Rwandan Sample: nominal association P-value=0.000075 Remain significant after correcting for multiple comparisons...... Remain significant after correcting for multiple comparisons. Minor allele carriers of rs4576167 displayed a reduced risk toward lifetime PTSD development. More... Significant


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
WWC1 WW and C2 domain containing 1 5q34 6(6/0/0)
RARS arginyl-tRNA synthetase 5q35.1 rSNP target

SNPs in LD with rs4576167 (count: 27)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 26)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx