PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs13189009 dbSNP Ensembl
Location	5:168462016 - 168462016(+)
Variant Seq	A
Ancestral Allele	A
Ref Seq	G
Minor Allele Frequence	0.26238
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000521391); intron_variant(ENST00000521089, ENST00000265293, ENST00000522140, ENST00000619752, ENST00000524038, ENST00000524228, ENST00000393895); non_coding_transcript_variant(ENST00000522140)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000393895, ENST00000524228, ENST00000619752, ENST00000265293, ENST00000524038, ENST00000521089)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000393895, ENST00000524228, ENST00000619752, ENST00000265293, ENST00000524038, ENST00000521089)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region
Chromatin State	Weak transcription;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
WWC1	WW and C2 domain containing 1	5q34	6(6/0/0)

SNPs in LD with rs13189009 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx