PTSDgene database

SNP Report

Basic Info
Name rs13189009 dbSNP Ensembl
Location 5:168462016 - 168462016(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.26238
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000521391); intron_variant(ENST00000521089, ENST00000265293, ENST00000522140, ENST00000619752, ENST00000524038, ENST00000524228, ENST00000393895); non_coding_transcript_variant(ENST00000522140)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000393895, ENST00000524228, ENST00000619752, ENST00000265293, ENST00000524038, ENST00000521089)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000393895, ENST00000524228, ENST00000619752, ENST00000265293, ENST00000524038, ENST00000521089)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
WWC1 WW and C2 domain containing 1 5q34 6(6/0/0)

SNPs in LD with rs13189009 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx