PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs11743260 dbSNP Ensembl
Location	5:168452201 - 168452201(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	T
Minor Allele Frequence	0.249401
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000619752, ENST00000524093, ENST00000524038, ENST00000521089, ENST00000524228, ENST00000522140, ENST00000265293, ENST00000393895); non_coding_transcript_variant(ENST00000524093, ENST00000522140)
SIFT Annotation	deleterious; tolerated
SIFT Variant Effect	deleterious(ENST00000524228, ENST00000521089, ENST00000619752, ENST00000265293, ENST00000393895); tolerated(ENST00000524038)
PolyPhen Annotation	benign; possibly_damaging
PolyPhen Variant Effect	benign(ENST00000265293, ENST00000393895); possibly_damaging(ENST00000524228, ENST00000521089, ENST00000524038, ENST00000619752)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Strong transcription;Genic enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
WWC1	WW and C2 domain containing 1	5q34	6(6/0/0)

SNPs in LD with rs11743260 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx