PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs62384143 dbSNP Ensembl
Location	5:168464663 - 168464663(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.259385
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000518204, ENST00000521391); intron_variant(ENST00000619752, ENST00000265293, ENST00000393895, ENST00000522140, ENST00000521089, ENST00000524038, ENST00000524228); non_coding_transcript_variant(ENST00000522140)
SIFT Annotation	deleterious; tolerated
SIFT Variant Effect	deleterious(ENST00000524038, ENST00000619752, ENST00000521089, ENST00000393895); tolerated(ENST00000524228, ENST00000265293)
PolyPhen Annotation	possibly_damaging
PolyPhen Variant Effect	possibly_damaging(ENST00000524228, ENST00000524038, ENST00000265293, ENST00000619752, ENST00000521089, ENST00000393895)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region
Chromatin State	Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
WWC1	WW and C2 domain containing 1	5q34	6(6/0/0)

SNPs in LD with rs62384143 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx