PTSDgene database

SNP Report

Basic Info
Name rs62384143 dbSNP Ensembl
Location 5:168464663 - 168464663(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.259385
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000518204, ENST00000521391); intron_variant(ENST00000619752, ENST00000265293, ENST00000393895, ENST00000522140, ENST00000521089, ENST00000524038, ENST00000524228); non_coding_transcript_variant(ENST00000522140)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000524038, ENST00000619752, ENST00000521089, ENST00000393895); tolerated(ENST00000524228, ENST00000265293)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000524228, ENST00000524038, ENST00000265293, ENST00000619752, ENST00000521089, ENST00000393895)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
WWC1 WW and C2 domain containing 1 5q34 6(6/0/0)

SNPs in LD with rs62384143 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx