SNP Report

Basic Info
Name |
rs13158279
dbSNP
Ensembl
|
Location |
5:168450922 - 168450922(+) |
Variant Seq |
A |
Ancestral Allele |
G |
Ref Seq |
G |
Minor Allele Frequence |
0.248203 |
Annotation |
intron_variant; non_coding_transcript_variant
|
Variant Effect |
intron_variant(ENST00000619752, ENST00000521089, ENST00000524093, ENST00000393895, ENST00000522140, ENST00000265293, ENST00000524038, ENST00000524228); non_coding_transcript_variant(ENST00000524093, ENST00000522140)
|
SIFT Annotation |
deleterious
|
SIFT Variant Effect |
deleterious(ENST00000619752, ENST00000265293, ENST00000521089, ENST00000524038, ENST00000524228, ENST00000393895)
|
PolyPhen Annotation |
benign; possibly_damaging
|
PolyPhen Variant Effect |
benign(ENST00000619752, ENST00000265293, ENST00000521089, ENST00000393895); possibly_damaging(ENST00000524038, ENST00000524228)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;Strong transcription;Enhancers
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs13158279 (count: 0)

SNP related eQTL (count: 1)