PTSDgene database

SNP Report

Basic Info
Name rs4976557 dbSNP Ensembl
Location 5:168456596 - 168456596(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.260783
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000524093); intron_variant(ENST00000619752, ENST00000524038, ENST00000524228, ENST00000393895, ENST00000522140, ENST00000521089, ENST00000265293); non_coding_transcript_variant(ENST00000522140)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000521089, ENST00000524038, ENST00000393895, ENST00000619752, ENST00000524228, ENST00000265293)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000521089, ENST00000524038, ENST00000393895, ENST00000619752, ENST00000524228, ENST00000265293)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
WWC1 WW and C2 domain containing 1 5q34 6(6/0/0)

SNPs in LD with rs4976557 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx