SNP Report
Name | rs9366890 dbSNP Ensembl | ||
---|---|---|---|
Location | 6:35595197 - 35595197(+) | ||
Variant Seq | A | ||
Ancestral Allele | A | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.189497 | ||
Annotation | intron_variant | ||
Variant Effect | intron_variant(ENST00000542713, ENST00000539068, ENST00000357266, ENST00000536438) | ||
SIFT Annotation | deleterious | ||
SIFT Variant Effect | deleterious(ENST00000357266, ENST00000542713, ENST00000536438, ENST00000539068) | ||
PolyPhen Annotation | possibly_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000357266, ENST00000542713, ENST00000536438, ENST00000539068) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | Chromatin interactive region | ||
Chromatin State | Weak transcription;Strong transcription;Flanking Active TSS;Genic enhancers;Enhancers;Transcr. at gene 5' nd 3' | ||
No. of Marker's Association Results | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.