SNP Report
Basic Info
| Name | rs4713899 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 6:35601504 - 35601504(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | G | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.164137 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000542713, ENST00000539068, ENST00000357266, ENST00000536438) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000357266, ENST00000539068, ENST00000536438) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000357266, ENST00000539068, ENST00000536438) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Enhancers;Weak transcription;Flanking Active TSS;Active TSS;Bivalent Enhancer | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| ARMC12 | armadillo repeat containing 12 | 6p21.31 | rSNP target |
| FKBP5 | FK506 binding protein 5 | 6p21.31 | 25(12/13/0) |
SNPs in LD with rs4713899 (count: 0)
SNP related eQTL (count: 1)