SNP Report

Basic Info

Name	rs4586205 dbSNP Ensembl
Location	11:113436407 - 113436407(+)
Variant Seq	T
Ancestral Allele	T
Ref Seq	G
Minor Allele Frequence	0.479034
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000543292, ENST00000540600, ENST00000542616, ENST00000362072, ENST00000346454); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000542968, ENST00000544518, ENST00000362072, ENST00000346454, ENST00000538967, ENST00000543292)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000542968, ENST00000544518, ENST00000362072, ENST00000346454, ENST00000538967, ENST00000543292)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature

SNP related association results

Normal genetic study related association results (count: 1)

Reference	Phenotype	Statistical Values	Author Comments	Marker's Category
Duan, Z.,2015	PTSD diagnosis	Allele dose analysis model: P-value=0.29; Dominant effect: ...... Allele dose analysis model: P-value=0.29; Dominant effect: P-value=0.66; Recessive effect: P-value=0.12. More...	No significant results. No significant results.	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DRD2	dopamine receptor D2	11q23.2	18(11/7/0)

SNPs in LD with rs4586205 (count: 3)

The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r²<=0.8.


rs_ID	Annotation	No. of Association Results(Positive/Negative/Trend)	r²[population]
rs4648318	intron_variant(ENST00000543292, ENST00000542616, ENST00000362072, ENST00000346454, ENST00000540600); non_coding_transcript_variant(ENST00000540600)	1(0/1/0)	0.8954[ASN]

rs_ID	Literature-origin SNPs with LD	Annotation	r²[population]
rs2471850	rs4648318 rs4586205	intron_variant; non_coding_transcript_variant	0.9856[ASN]
rs2471856	rs4586205 rs6279	upstream_gene_variant; intron_variant; non_coding_transcript_variant	0.8298[ASN]

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
SKA2	Yes	Adipose Subcutaneous	cis	GTEx