PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs2471850 dbSNP Ensembl
Location	11:113430544 - 113430544(+)
Variant Seq	A
Ancestral Allele	A
Ref Seq	G
Minor Allele Frequence	0.46266
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000346454, ENST00000543292, ENST00000542616, ENST00000540600, ENST00000362072); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation	tolerated_-_low_confidence
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000362072, ENST00000544518, ENST00000346454, ENST00000542968, ENST00000543292, ENST00000538967)
PolyPhen Annotation	benign; possibly_damaging
PolyPhen Variant Effect	benign(ENST00000362072, ENST00000544518, ENST00000346454, ENST00000542968, ENST00000543292, ENST00000542616); possibly_damaging(ENST00000538967)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DRD2	dopamine receptor D2	11q23.2	18(11/7/0)

SNPs in LD with rs2471850 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx