SNP Report
Name | rs2572096 dbSNP Ensembl | ||
---|---|---|---|
Location | 6:99003195 - 99003195(+) | ||
Variant Seq | C | ||
Ancestral Allele | T | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.157149 | ||
Annotation | upstream_gene_variant | ||
SIFT Annotation | deleterious_-_low_confidence | ||
SIFT Variant Effect | deleterious_-_low_confidence(ENST00000229971, ENST00000369244) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000229971, ENST00000369244) | ||
rSNP? | No Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Inactive region | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.