PTSDgene database

SNP Report

Basic Info
Name rs12173555 dbSNP Ensembl
Location 6:99019785 - 99019785(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.108427
Annotation upstream_gene_variant
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000229971, ENST00000369244)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000229971, ENST00000369244)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs12173555 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx