PTSDgene database

SNP Report

Basic Info
Name rs2572109 dbSNP Ensembl
Location 6:98992493 - 98992493(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.144369
Annotation upstream_gene_variant
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000229971, ENST00000369244)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000229971, ENST00000369244)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs2572109 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx