PTSDgene database

SNP Report

Basic Info
Name rs12364283 dbSNP Ensembl
Location 11:113476233 - 113476233(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.0473243
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000346454, ENST00000362072, ENST00000542616, ENST00000540600)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Active TSS;Weak transcription
No. of Marker's Association Results 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nelson, E. C.,2014 PTSD P-value=0.00014, OR=1.66. In only amphetamine dependent samp...... P-value=0.00014, OR=1.66. In only amphetamine dependent samples: OR=2.86, 95%CI: 1.92-4.27; P-value=2.6E-07 More... The SNP most strongly associated with PTSD is rs12364283. Ho...... The SNP most strongly associated with PTSD is rs12364283. However, this association was not significant with a stringent Bonferroni correction for multiple comparisons. Additional analyses revealed the association involving rs12364283 is largely limited to amphetamine dependent individuals. More... Significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs12364283 (count: 2)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 1)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
TRIM37 Yes Adipose Subcutaneous cis GTEx