PTSDgene database

SNP Report

Basic Info
Name rs12118091 dbSNP Ensembl
Location 1:238413314 - 238413314(+)
Variant Seq G
Ancestral Allele G
Ref Seq T
Minor Allele Frequence 0.128195
Annotation upstream_gene_variant
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000611898, ENST00000366570)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000604646)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Logue, M. W.,2013 PTSD In discovery group (allele): OR=1.9, P-value=4.9E-06. In discovery group (allele): OR=1.9, P-value=4.9E-06. It reached the suggestive level of significance in discovery...... It reached the suggestive level of significance in discovery group. More... Trend

SNP related genes (count: 0)

SNPs in LD with rs12118091 (count: 13)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 12)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx