SNP Report
Basic Info
| Name | rs2039988 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:238411180 - 238411180(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.150958 | ||
| Annotation | upstream_gene_variant | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000611898, ENST00000366570) | ||
| PolyPhen Annotation | unknown | ||
| PolyPhen Variant Effect | unknown(ENST00000604646) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 0)
SNPs in LD with rs2039988 (count: 0)
SNP related eQTL (count: 1)