PTSDgene database

SNP Report

Basic Info
Name rs10802687 dbSNP Ensembl
Location 1:238412679 - 238412679(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.1248
Annotation upstream_gene_variant
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000611898, ENST00000366570)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000604646)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs10802687 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx