SNP Report
Basic Info
| Name | rs7126715 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 11:63414285 - 63414285(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | A | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.466254 | ||
| Annotation | downstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000536333, ENST00000279178) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000279178) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000279178) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Solovieff, N.,2014 | PTSD diagnosis | P-value=0.210 P-value=0.210 | Achieved nominal levels of significance with PTSD diagnosis,...... Achieved nominal levels of significance with PTSD diagnosis, although was not significant after correction for multiple testing More... | Non-significant |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| DRD4 | dopamine receptor D4 | 11p15.5 | 7(2/5/0) |
| SLC22A9 | solute carrier family 22 (organic anion transporter), member 9 | 11q12.3 | Mapped by Literature SNP, Mapped by LD-proxy |
SNPs in LD with rs7126715 (count: 88)
Literature-origin SNPs (count: 0)
LD-proxies (count: 88)
SNP related eQTL (count: 1)