SNP Report
Name | rs3766246 dbSNP Ensembl | ||
---|---|---|---|
Location | 1:46399999 - 46399999(+) | ||
Variant Seq | G | ||
Ancestral Allele | G | ||
Ref Seq | A | ||
Minor Allele Frequence | 0.434505 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000243167, ENST00000493735, ENST00000468718); non_coding_transcript_variant(ENST00000493735, ENST00000468718) | ||
SIFT Annotation | deleterious | ||
SIFT Variant Effect | deleterious(ENST00000243167) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000243167) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | Chromatin interactive region | ||
Chromatin State | Weak transcription;Enhancers;Flanking Active TSS | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.