SNP Report
Basic Info
| Name | rs17104851 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 12:68137564 - 68137564(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.167732 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000536914); non_coding_transcript_variant(ENST00000536914) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000393555, ENST00000344096) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000393555, ENST00000344096) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Bivalent Enhancer;Flanking Active TSS;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Almli, L. M.,2015 | PTSD Symptoms as measured by the quantitave CAPS scores | In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=-23.74 (4.83), P-value=2.47E-06. More... | None None | Trend |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| IFNG-AS1 | IFNG antisense RNA 1 | 12q15 | Mapped by Literature SNP, Mapped by LD-proxy |
SNPs in LD with rs17104851 (count: 20)
Literature-origin SNPs (count: 1)
LD-proxies (count: 19)
SNP related eQTL (count: 1)