PTSDgene database

SNP Report

Basic Info
Name rs12370402 dbSNP Ensembl
Location 12:68131996 - 68131996(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.153554
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000536914); non_coding_transcript_variant(ENST00000536914)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000393555, ENST00000344096)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000393555, ENST00000344096)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
IFNG-AS1 IFNG antisense RNA 1 12q15 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs12370402 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx