PTSDgene database

SNP Report

Basic Info
Name rs7956688 dbSNP Ensembl
Location 12:68161547 - 68161547(+)
Variant Seq A,T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.130192
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000229135); intron_variant(ENST00000536914); non_coding_transcript_variant(ENST00000536914)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000229135)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000229135)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
IFNG-AS1 IFNG antisense RNA 1 12q15 Mapped by Literature SNP, Mapped by LD-proxy
IFNG interferon, gamma 12q14 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs7956688 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx