PTSDgene database

SNP Report

Basic Info
Name rs74099930 dbSNP Ensembl
Location 12:68143492 - 68143492(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.168131
Annotation non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000542812); intron_variant(ENST00000536914); non_coding_transcript_variant(ENST00000536914, ENST00000542812)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000393555, ENST00000344096)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000393555, ENST00000344096)
rSNP? Yes Link in rVarBase
Related Regulatory Elements lncRNA
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
IFNG-AS1 IFNG antisense RNA 1 12q15 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs74099930 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx