PTSDgene database

SNP Report

Basic Info
Name rs2069728 dbSNP Ensembl
Location 12:68154004 - 68154004(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.165535
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000229135); intron_variant(ENST00000536914); non_coding_transcript_variant(ENST00000536914)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000229135)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000229135)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Active TSS;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
IFNG-AS1 IFNG antisense RNA 1 12q15 Mapped by Literature SNP, Mapped by LD-proxy
IFNG interferon, gamma 12q14 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs2069728 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx