SNP Report
Basic Info
| Name | rs2069728 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 12:68154004 - 68154004(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.165535 | ||
| Annotation | downstream_gene_variant; intron_variant; non_coding_transcript_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000229135); intron_variant(ENST00000536914); non_coding_transcript_variant(ENST00000536914) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000229135) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000229135) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Active TSS;Strong transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| IFNG-AS1 | IFNG antisense RNA 1 | 12q15 | Mapped by Literature SNP, Mapped by LD-proxy |
| IFNG | interferon, gamma | 12q14 | Mapped by Literature SNP, Mapped by LD-proxy |
SNPs in LD with rs2069728 (count: 0)
SNP related eQTL (count: 1)