PTSDgene database

SNP Report

Basic Info
Name rs1334894 dbSNP Ensembl
Location 6:35647353 - 35647353(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.0567093
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000391277); intron_variant(ENST00000542713, ENST00000536438, ENST00000539068, ENST00000357266)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000542713); tolerated(ENST00000539068, ENST00000357266, ENST00000536438)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000539068, ENST00000542713, ENST00000357266, ENST00000536438)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Enhancers;Weak transcription;Strong transcription;Genic enhancers
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Binder, E. B.,2008 PTSD Symptoms (PSS scores) No available detail information. No available detail information. We found no significant main effect of FKBP5 genotypes on PS...... We found no significant main effect of FKBP5 genotypes on PSS total score. More... Non-significant
G*E study related association result (count: 1)
Reference Phenotype Environment Statistical Values Author Comments Marker's Category
Binder, E. B.,2008 PTSD Symptoms (PSS scores) Child abuse No available detail information. No available detail information. No significant signals was observed about this SNP's interac...... No significant signals was observed about this SNP's interaction of FKBP5 with child abuse to predict PTSD symptoms. More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FKBP5 FK506 binding protein 5 6p21.31 25(12/13/0)

SNPs in LD with rs1334894 (count: 39)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 39)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx