SNP Report
Name | rs1334894 dbSNP Ensembl | ||
---|---|---|---|
Location | 6:35647353 - 35647353(+) | ||
Variant Seq | T | ||
Ancestral Allele | C | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.0567093 | ||
Annotation | upstream_gene_variant; intron_variant | ||
Variant Effect | upstream_gene_variant(ENST00000391277); intron_variant(ENST00000542713, ENST00000536438, ENST00000539068, ENST00000357266) | ||
SIFT Annotation | deleterious; tolerated | ||
SIFT Variant Effect | deleterious(ENST00000542713); tolerated(ENST00000539068, ENST00000357266, ENST00000536438) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000539068, ENST00000542713, ENST00000357266, ENST00000536438) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | TF binding region | ||
Chromatin State | Enhancers;Weak transcription;Strong transcription;Genic enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.