SNP Report
Basic Info
| Name | rs9688674 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 6:35510027 - 35510027(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.0453275 | ||
| Annotation | downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000448446); upstream_gene_variant(ENST00000496434); intron_variant(ENST00000373892, ENST00000428978, ENST00000322263, ENST00000614066, ENST00000229771); non_coding_transcript_variant(ENST00000373892) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000229771, ENST00000614066); tolerated(ENST00000322263) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000229771, ENST00000614066, ENST00000322263) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Enhancers;Bivalent Enhancer | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| TULP1 | tubby like protein 1 | 6p21.3 | Mapped by LD-proxy |
SNPs in LD with rs9688674 (count: 0)
SNP related eQTL (count: 1)