SNP Report
Name | rs10836233 dbSNP Ensembl | ||
---|---|---|---|
Location | 11:34436025 - 34436025(+) | ||
Variant Seq | A | ||
Ancestral Allele | G | ||
Ref Seq | G | ||
Minor Allele Frequence | 0.188299 | ||
Annotation | downstream_gene_variant; upstream_gene_variant | ||
Variant Effect | downstream_gene_variant(ENST00000405137); upstream_gene_variant(ENST00000241052) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000435224) | ||
PolyPhen Annotation | possibly_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000435224) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | Chromatin interactive region | ||
Chromatin State | Weak transcription;Enhancers;Flanking Active TSS | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.