SNP Report
Basic Info
| Name | rs10836235 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 11:34439157 - 34439157(+) | ||
| Variant Seq | G,T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.125399 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000241052) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000241052) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000241052) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Active TSS;Enhancers;Transcr. at gene 5' nd 3';Flanking Active TSS;Bivalent/Poised TSS;Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CAT | catalase | 11p13 | 1(1/0/0) |
| CIR1P3 | corepressor interacting with RBPJ, 1 pseudogene 3 | 11p13 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
SNPs in LD with rs10836235 (count: 0)
SNP related eQTL (count: 1)