PTSDgene database

SNP Report

Basic Info
Name rs9933111 dbSNP Ensembl
Location 16:10070742 - 10070742(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.114816
Annotation intron_variant
Variant Effect intron_variant(ENST00000562109, ENST00000330684, ENST00000396573)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000396573, ENST00000330684, ENST00000396575, ENST00000562109, ENST00000535259)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000396573, ENST00000330684, ENST00000562109, ENST00000535259); probably_damaging(ENST00000396575)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nelson, E. C.,2014 PTSD P-value=0.015, OR=1.35 P-value=0.015, OR=1.35 Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... Non-significant

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GRIN2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A 16p13.2 1(0/1/0)

SNPs in LD with rs9933111 (count: 153)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 153)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx