SNP Report

Basic Info

Name	rs9933111 dbSNP Ensembl
Location	16:10070742 - 10070742(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	A
Minor Allele Frequence	0.114816
Annotation	intron_variant
Variant Effect	intron_variant(ENST00000562109, ENST00000330684, ENST00000396573)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000396573, ENST00000330684, ENST00000396575, ENST00000562109, ENST00000535259)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000396573, ENST00000330684, ENST00000562109, ENST00000535259); probably_damaging(ENST00000396575)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Enhancers;Weak transcription
No. of Marker's Association Results	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature

SNP related association results

Normal genetic study related association results (count: 1)

Reference	Phenotype	Statistical Values	Author Comments	Marker's Category
Nelson, E. C.,2014	PTSD	P-value=0.015, OR=1.35 P-value=0.015, OR=1.35	Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More...	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
GRIN2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	16p13.2	1(0/1/0)

SNPs in LD with rs9933111 (count: 153)

The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 153)

rs_ID	Literature-origin SNPs with LD	Annotation	r²[population]
rs67828712	rs9933111	intron_variant	1.0000[EUR]
rs72774110	rs9933111	intron_variant	0.9578[EUR]
rs72774111	rs9933111	intron_variant	0.9578[EUR]
rs28491487	rs9933111	intron_variant	0.9163[EUR]
rs1111537	rs9933111	intron_variant	0.9579[EUR]
rs72772396	rs9933111	intron_variant	0.9579[EUR]
rs72776031	rs9933111	intron_variant	0.8004[EUR]
rs7198175	rs9933111	intron_variant	0.9719[EUR]
rs1375072	rs9933111	intron_variant	0.9718[EUR]
rs8056683	rs9933111	intron_variant	0.9163[EUR]
rs28540790	rs9933111	intron_variant	1.0000[EUR]
rs7200649	rs9933111	intron_variant	0.8885[EUR]
rs7201627	rs9933111	intron_variant	0.8395[EUR]
rs7199095	rs9933111	intron_variant	0.8811[EUR]
rs7191991	rs9933111	intron_variant	0.9443[EUR]
rs9940458	rs9933111	intron_variant	1.0000[EUR]
rs9927648	rs9933111	intron_variant	0.9718[EUR]
rs9927554	rs9933111	intron_variant	0.9310[EUR]
rs72774106	rs9933111	intron_variant	0.9718[EUR]
rs72774122	rs9933111	intron_variant	0.9718[EUR]
rs8057034	rs9933111	intron_variant	0.9718[EUR]
rs9925707	rs9933111	intron_variant	0.9163[EUR]
rs28465345	rs9933111	intron_variant	0.9578[EUR]
rs8043864	rs9933111	intron_variant	0.9719[EUR]
rs9935354	rs9933111	intron_variant	0.9579[EUR]
rs13331465	rs9933111	intron_variant	1.0000[EUR]
rs12102500	rs9933111	intron_variant	0.9163[EUR]
rs58834898	rs9933111	intron_variant	0.9163[EUR]
rs16956843	rs9933111	intron_variant	1.0000[EUR]
rs13331085	rs9933111	intron_variant	1.0000[EUR]
rs9935774	rs9933111	intron_variant	0.9438[EUR]
rs9927914	rs9933111	intron_variant	0.9163[EUR]
rs1463128	rs9933111	intron_variant	0.9163[EUR]
rs9302409	rs9933111	intron_variant	1.0000[EUR]
rs9927926	rs9933111	intron_variant	0.9163[EUR]
rs59568026	rs9933111	intron_variant	1.0000[EUR]
rs72774136	rs9933111	intron_variant	0.9718[EUR]
rs72772395	rs9933111	intron_variant	0.9438[EUR]
rs13331457	rs9933111	intron_variant	0.9303[EUR]
rs1448261	rs9933111	intron_variant	0.9579[EUR]
rs8059513	rs9933111	intron_variant	0.9578[EUR]
rs13335102	rs9933111	intron_variant	0.9163[EUR]
rs72774116	rs9933111	intron_variant	0.9718[EUR]
rs72774125	rs9933111	intron_variant	0.9718[EUR]
rs57737700	rs9933111	intron_variant	0.9718[EUR]
rs58797003	rs9933111	intron_variant	1.0000[EUR]
rs9933945	rs9933111	intron_variant	1.0000[EUR]
rs9938777	rs9933111	intron_variant	0.9718[EUR]
rs9937970	rs9933111	intron_variant	0.9163[EUR]
rs9930321	rs9933111	intron_variant	0.9578[EUR]
rs7197200	rs9933111	intron_variant	0.9719[EUR]
rs9936854	rs9933111	intron_variant	0.9718[EUR]
rs67780046	rs9933111	intron_variant	1.0000[EUR]
rs7200039	rs9933111	intron_variant	0.9163[EUR]
rs72774115	rs9933111	intron_variant	0.9718[EUR]
rs7188081	rs9933111	intron_variant	0.9579[EUR]
rs72772381	rs9933111	intron_variant	0.8885[EUR]
rs7188291	rs9933111	intron_variant	0.9579[EUR]
rs7189360	rs9933111	intron_variant	0.9719[EUR]
rs9922460	rs9933111	intron_variant	0.9579[EUR]
rs8061018	rs9933111	intron_variant	1.0000[EUR]
rs7203194	rs9933111	intron_variant	0.9163[EUR]
rs2352741	rs9933111	intron_variant	0.9859[EUR]
rs73510663	rs9933111	intron_variant	0.9718[EUR]
rs9925801	rs9933111	intron_variant	0.9163[EUR]
rs9922338	rs9933111	intron_variant	0.9718[EUR]
rs7206094	rs9933111	intron_variant	0.8811[EUR]
rs72774131	rs9933111	intron_variant	0.9718[EUR]
rs9927532	rs9933111	intron_variant	0.9719[EUR]
rs60950183	rs9933111	intron_variant	1.0000[EUR]
rs72774171	rs9933111	intron_variant	0.9579[EUR]
rs7206296	rs9933111	intron_variant	0.9163[EUR]
rs60864732	rs9933111	intron_variant	1.0000[EUR]
rs72772389	rs9933111	intron_variant	0.9438[EUR]
rs10518152	rs9933111	intron_variant	0.9718[EUR]
rs28375797	rs9933111	intron_variant	0.9718[EUR]
rs72774119	rs9933111	intron_variant	0.9718[EUR]
rs9922871	rs9933111	intron_variant	0.9718[EUR]
rs28528871	rs9933111	intron_variant	0.8891[EUR]
rs1448262	rs9933111	intron_variant	0.9579[EUR]
rs1448268	rs9933111	intron_variant	0.9579[EUR]
rs8062241	rs9933111	intron_variant	1.0000[EUR]
rs72774148	rs9933111	intron_variant	0.9718[EUR]
rs9938061	rs9933111	intron_variant	0.9719[EUR]
rs72774139	rs9933111	intron_variant	0.9718[EUR]
rs9922383	rs9933111	intron_variant	0.9579[EUR]
rs13336632	rs9933111	intron_variant	1.0000[EUR]
rs1375075	rs9933111	intron_variant	0.9579[EUR]
rs13332699	rs9933111	intron_variant	1.0000[EUR]
rs7194796	rs9933111	intron_variant	0.9579[EUR]
rs13331428	rs9933111	intron_variant	1.0000[EUR]
rs72774143	rs9933111	intron_variant	0.9718[EUR]
rs9933478	rs9933111	intron_variant	0.9438[EUR]
rs10518151	rs9933111	intron_variant	0.9718[EUR]
rs58861142	rs9933111	intron_variant	1.0000[EUR]
rs7188122	rs9933111	intron_variant	0.9579[EUR]
rs72774121	rs9933111	intron_variant	0.9718[EUR]
rs10518150	rs9933111	intron_variant	0.9718[EUR]
rs9930396	rs9933111	intron_variant	0.9578[EUR]
rs7196139	rs9933111	intron_variant	0.8004[EUR]
rs17671033	rs9933111	intron_variant	0.9438[EUR]
rs72774134	rs9933111	intron_variant	0.9718[EUR]
rs28581562	rs9933111	intron_variant	0.9438[EUR]
rs4780784	rs9933111	intron_variant	0.9579[EUR]
rs13331461	rs9933111	intron_variant	1.0000[EUR]
rs72774129	rs9933111	intron_variant	0.9718[EUR]
rs9931653	rs9933111	intron_variant	0.9718[EUR]
rs72774127	rs9933111	intron_variant	0.9718[EUR]
rs67171153	rs9933111	intron_variant	1.0000[EUR]
rs61686802	rs9933111	intron_variant	1.0000[EUR]
rs13332501	rs9933111	intron_variant	0.8637[EUR]
rs17570290	rs9933111	intron_variant	0.9718[EUR]
rs8056514	rs9933111	intron_variant	0.9163[EUR]
rs13332018	rs9933111	intron_variant	0.9718[EUR]
rs72774138	rs9933111	intron_variant	0.9718[EUR]
rs12102636	rs9933111	intron_variant	0.9163[EUR]
rs28634372	rs9933111	intron_variant	0.9718[EUR]
rs7190321	rs9933111	intron_variant	0.9023[EUR]
rs1448271	rs9933111	intron_variant	0.9579[EUR]
rs72774141	rs9933111	intron_variant	0.9718[EUR]
rs72772397	rs9933111	intron_variant	0.9170[EUR]
rs9938467	rs9933111	intron_variant	1.0000[EUR]
rs8062320	rs9933111	intron_variant	0.8885[EUR]
rs72774158	rs9933111	intron_variant	0.9718[EUR]
rs13331514	rs9933111	intron_variant	1.0000[EUR]
rs8062624	rs9933111	intron_variant	0.9860[EUR]
rs72774137	rs9933111	intron_variant	0.9718[EUR]
rs13331030	rs9933111	intron_variant	1.0000[EUR]
rs1375076	rs9933111	intron_variant	0.9579[EUR]
rs8061963	rs9933111	intron_variant	0.8752[EUR]
rs67679267	rs9933111	intron_variant	0.8891[EUR]
rs72772374	rs9933111	intron_variant	0.8885[EUR]
rs1448270	rs9933111	intron_variant	0.9438[EUR]
rs13336710	rs9933111	intron_variant	1.0000[EUR]
rs60276136	rs9933111	intron_variant	1.0000[EUR]
rs1448272	rs9933111	intron_variant	0.9579[EUR]
rs72774159	rs9933111	intron_variant	0.9718[EUR]
rs10518149	rs9933111	intron_variant	0.9718[EUR]
rs72774126	rs9933111	intron_variant	0.9718[EUR]
rs72774150	rs9933111	intron_variant	0.9718[EUR]
rs57587803	rs9933111	intron_variant	1.0000[EUR]
rs13331168	rs9933111	intron_variant	1.0000[EUR]
rs61224814	rs9933111	intron_variant	1.0000[EUR]
rs56666352	rs9933111	intron_variant	1.0000[EUR]
rs13332665	rs9933111	intron_variant	1.0000[EUR]
rs17670977	rs9933111	intron_variant	0.9579[EUR]
rs7192622	rs9933111	intron_variant	0.9719[EUR]
rs72774156	rs9933111	intron_variant	0.9718[EUR]
rs72776036	rs9933111	intron_variant	0.8004[EUR]
rs12102832	rs9933111	intron_variant	1.0000[EUR]
rs8059547	rs9933111	intron_variant	0.9859[EUR]
rs13331088	rs9933111	intron_variant	1.0000[EUR]
rs28574279	rs9933111	intron_variant	0.9718[EUR]

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-707O23.5	No	Adipose Subcutaneous	cis	GTEx