SNP Report
Basic Info
| Name | rs28574279 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 16:10075814 - 10075814(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.0611022 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000562109, ENST00000330684, ENST00000396573) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000396573, ENST00000330684, ENST00000396575, ENST00000562109, ENST00000535259) | ||
| PolyPhen Annotation | benign; probably_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000396573, ENST00000330684, ENST00000562109, ENST00000535259); probably_damaging(ENST00000396575) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Enhancers;Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GRIN2A | glutamate receptor, ionotropic, N-methyl D-aspartate 2A | 16p13.2 | 1(0/1/0) |
SNPs in LD with rs28574279 (count: 0)
SNP related eQTL (count: 1)