SNP Report
Name | rs9923585 dbSNP Ensembl | ||
---|---|---|---|
Location | 16:15983503 - 15983503(+) | ||
Variant Seq | C | ||
Ancestral Allele | G | ||
Ref Seq | G | ||
Minor Allele Frequence | 0.0131789 | ||
Annotation | intron_variant | ||
Variant Effect | intron_variant(ENST00000399410, ENST00000399408) | ||
SIFT Annotation | deleterious; tolerated | ||
SIFT Variant Effect | deleterious(ENST00000575938, ENST00000255759); tolerated(ENST00000573087, ENST00000572415, ENST00000573429, ENST00000575073, ENST00000573396, ENST00000573968) | ||
PolyPhen Annotation | benign; possibly_damaging | ||
PolyPhen Variant Effect | benign(ENST00000573087, ENST00000572415); possibly_damaging(ENST00000575938, ENST00000573429, ENST00000255759, ENST00000575073, ENST00000573396, ENST00000573968) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Genic enhancers;Enhancers;ZNF genes & repeats | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.