PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs45479992 dbSNP Ensembl
Location	16:15976094 - 15976094(+)
Variant Seq	T
Ancestral Allele	C
Ref Seq	C
Minor Allele Frequence	0.0131789
Annotation	intron_variant
Variant Effect	intron_variant(ENST00000399408, ENST00000399410)
SIFT Annotation	deleterious; tolerated
SIFT Variant Effect	deleterious(ENST00000575938, ENST00000255759); tolerated(ENST00000573087, ENST00000572415, ENST00000573429, ENST00000575073, ENST00000573396, ENST00000573968)
PolyPhen Annotation	benign; possibly_damaging
PolyPhen Variant Effect	benign(ENST00000573087, ENST00000572415); possibly_damaging(ENST00000575938, ENST00000573429, ENST00000255759, ENST00000575073, ENST00000573396, ENST00000573968)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Enhancers;Weak transcription;Genic enhancers;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
ABCC1	ATP binding cassette subfamily C member 1	16p13.1	1(0/0/1)

SNPs in LD with rs45479992 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-707O23.5	No	Adipose Subcutaneous	cis	GTEx