SNP Report
Name | rs913168 dbSNP Ensembl | ||
---|---|---|---|
Location | 1:46392904 - 46392904(+) | ||
Variant Seq | C | ||
Ancestral Allele | C | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.419728 | ||
Annotation | upstream_gene_variant | ||
Variant Effect | upstream_gene_variant(ENST00000493735, ENST00000468718, ENST00000243167) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000474844, ENST00000537428) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000474844, ENST00000537428) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | TF binding region | ||
Chromatin State | Active TSS;Flanking Active TSS;ZNF genes & repeats;Weak transcription | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.