SNP Report
Basic Info
| Name | rs913168 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:46392904 - 46392904(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.419728 | ||
| Annotation | upstream_gene_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000493735, ENST00000468718, ENST00000243167) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000474844, ENST00000537428) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000474844, ENST00000537428) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region | ||
| Chromatin State | Active TSS;Flanking Active TSS;ZNF genes & repeats;Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Pardini, M.,2012 | PTSD | C/- compared with T/T: In TPBI subjects without vmPFC lesi...... C/- compared with T/T: In TPBI subjects without vmPFC lesions: P-value= 0.18. In the vmPFC lesion group: P-value= 0.86. More... | No significant difference in PTSD prevalence between genotyp...... No significant difference in PTSD prevalence between genotypes in both subjects. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| FAAH | fatty acid amide hydrolase | 1p35-p34 | 8(3/5/0) |
SNPs in LD with rs913168 (count: 11)
Literature-origin SNPs (count: 0)
LD-proxies (count: 11)
SNP related eQTL (count: 1)