PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs7503190 dbSNP Ensembl
Location	17:59106801 - 59106801(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	A
Minor Allele Frequence	0.388179
Annotation	downstream_gene_variant; non_coding_transcript_exon_variant; 5_prime_UTR_variant; upstream_gene_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000330137); non_coding_transcript_exon_variant(ENST00000451775); 5_prime_UTR_variant(ENST00000393065, ENST00000393066); upstream_gene_variant(ENST00000625984, ENST00000577554, ENST00000584889, ENST00000580620, ENST00000580973, ENST00000580122, ENST00000583387, ENST00000262294); non_coding_transcript_variant(ENST00000451775)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000581068, ENST00000578105, ENST00000330137)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000581068, ENST00000578105, ENST00000330137)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region;CpG island;Chromatin interactive region;lncRNA
Chromatin State	Active TSS;Transcr. at gene 5' nd 3';Bivalent/Poised TSS
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 4)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
TMSB10	thymosin beta 10	2p11.2	rSNP target
TRIM37	tripartite motif containing 37	17q22	Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
CLTC	clathrin heavy chain	17q23.1	rSNP target
SKA2	spindle and kinetochore associated complex subunit 2	17q23.2	2(0/2/0)

SNPs in LD with rs7503190 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1	Yes	Adipose Subcutaneous	cis	GTEx