SNP Report
Name | rs737054 dbSNP Ensembl | ||
---|---|---|---|
Location | 6:35607710 - 35607710(+) | ||
Variant Seq | A | ||
Ancestral Allele | G | ||
Ref Seq | G | ||
Minor Allele Frequence | 0.193091 | ||
Annotation | non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant | ||
Variant Effect | non_coding_transcript_exon_variant(ENST00000407266); intron_variant(ENST00000542713, ENST00000539068, ENST00000357266, ENST00000536438); non_coding_transcript_variant(ENST00000407266) | ||
SIFT Annotation | deleterious | ||
SIFT Variant Effect | deleterious(ENST00000542713, ENST00000357266, ENST00000539068, ENST00000536438) | ||
PolyPhen Annotation | probably_damaging | ||
PolyPhen Variant Effect | probably_damaging(ENST00000542713, ENST00000357266, ENST00000539068, ENST00000536438) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Strong transcription;ZNF genes & repeats;Enhancers;Genic enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.