SNP Report
Basic Info
| Name | rs7200719 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 16:10000689 - 10000689(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | T | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.0603035 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000566670, ENST00000562109, ENST00000566683, ENST00000568247, ENST00000330684, ENST00000396573); non_coding_transcript_variant(ENST00000566670, ENST00000566683, ENST00000568247) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000396573, ENST00000330684, ENST00000396575, ENST00000562109, ENST00000535259) | ||
| PolyPhen Annotation | benign; probably_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000396573, ENST00000330684, ENST00000562109, ENST00000535259); probably_damaging(ENST00000396575) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Nelson, E. C.,2014 | PTSD | P-value=0.014, OR=1.35 P-value=0.014, OR=1.35 | Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GRIN2A | glutamate receptor, ionotropic, N-methyl D-aspartate 2A | 16p13.2 | 1(0/1/0) |
SNPs in LD with rs7200719 (count: 57)
Literature-origin SNPs (count: 0)
LD-proxies (count: 57)
SNP related eQTL (count: 1)