PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs17670544 dbSNP Ensembl
Location	16:9986175 - 9986175(+)
Variant Seq	T
Ancestral Allele	A
Ref Seq	A
Minor Allele Frequence	0.0509185
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000568247, ENST00000566683, ENST00000562109, ENST00000330684, ENST00000566670, ENST00000396573); non_coding_transcript_variant(ENST00000568247, ENST00000566683, ENST00000566670)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000396573, ENST00000330684, ENST00000396575, ENST00000562109, ENST00000535259)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000396573, ENST00000330684, ENST00000562109, ENST00000535259); probably_damaging(ENST00000396575)
rSNP?	No Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Inactive region
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
GRIN2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	16p13.2	1(0/1/0)

SNPs in LD with rs17670544 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-707O23.5	No	Adipose Subcutaneous	cis	GTEx