SNP Report
Basic Info
| Name | rs7076096 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 10:85848703 - 85848703(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | T | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.240216 | ||
| Annotation | intron_variant; NMD_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000464741, ENST00000327946, ENST00000536331); NMD_transcript_variant(ENST00000464741) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000536331, ENST00000464741, ENST00000327946) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000536331, ENST00000464741, ENST00000327946) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Xie, P.,2013 | Lifetime PTSD | Trauma Exposed African Americans: in GWAS,P-value=9.12E-06,i...... Trauma Exposed African Americans: in GWAS,P-value=9.12E-06,in replication,P-value=NT,in combined, P-value=NT. More... | No significant signals were observed in the African American...... No significant signals were observed in the African American part of the sample. Genome-wide association study analyses restricted to trauma-exposed individuals yielded very similar results. More... | Trend |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GRID1 | glutamate receptor, ionotropic, delta 1 | 10q22 | Mapped by Literature SNP, Mapped by LD-proxy |
| GRIN1 | glutamate receptor, ionotropic, N-methyl D-aspartate 1 | 9q34.3 | 1(0/0/1) |
SNPs in LD with rs7076096 (count: 18)
Literature-origin SNPs (count: 0)
LD-proxies (count: 18)
SNP related eQTL (count: 1)